search

OpenOmics / chrom-seek

An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
https://openomics.github.io/chrom-seek/
MIT License
5 stars 2 forks source link

Update behavior --peakcall parser and validation #29

Open skchronicles opened 10 months ago

skchronicles commented 10 months ago

About

Make the following changes to how the --peakcall PEAKCALL file is parsed and validated:

  1. Update the names of the following columns: a. "ChIP" becomes "Sample" b. "Input" becomes "InputControl"
  2. InputControl becomes an optional column. a. Only "Sample" and "Group" should be required
  3. Documentation on the CLI and wiki should be updated to include the changes and made to encompass both ATAC and ChIP