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OpenOmics / chrom-seek

An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
https://openomics.github.io/chrom-seek/
MIT License
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Update behavior --peakcall parser and validation #29

Open skchronicles opened 9 months ago

skchronicles commented 9 months ago

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Make the following changes to how the --peakcall PEAKCALL file is parsed and validated:

  1. Update the names of the following columns: a. "ChIP" becomes "Sample" b. "Input" becomes "InputControl"
  2. InputControl becomes an optional column. a. Only "Sample" and "Group" should be required
  3. Documentation on the CLI and wiki should be updated to include the changes and made to encompass both ATAC and ChIP