This adds a mechanism to control how snakemake decides what rules to re-run. By default, this option is set to the following: ['mtime', 'params', 'input', 'software-env', 'code'] which can cause upstream rules to re-run unexpectedly.
Add something to the docs stating if this occurs, then this should be set to --rerun-trigger mtime. This allows for the user to decide how/why rules are re-run.
Add
--rerun-triggerto run sub commandThis adds a mechanism to control how snakemake decides what rules to re-run. By default, this option is set to the following:
['mtime', 'params', 'input', 'software-env', 'code']which can cause upstream rules to re-run unexpectedly.Add something to the docs stating if this occurs, then this should be set to
--rerun-trigger mtime. This allows for the user to decide how/why rules are re-run.