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OpenOmics / chrom-seek

An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
https://openomics.github.io/chrom-seek/
MIT License
5 stars 2 forks source link

ATAC ppqt #39

Closed schaughencyp closed 1 month ago

schaughencyp commented 5 months ago

For ATAC part,

ppqt can fail causing a lot of downstream issues which can lead to bigwigs not being made. If this not necessary for bigwig formation, this should be removed.

Paul

tovahmarkowitz commented 1 month ago

Duplicate of another more complete issue