OpenOmics / chrom-seek

An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
https://openomics.github.io/chrom-seek/
MIT License
5 stars 2 forks source link

Refactor codebase #41

Closed rroutsong closed 2 months ago

rroutsong commented 3 months ago

Refactoring the code base to make more interpretable and extendable.

This is a large review, with alot of moving around and cruft cleaning. I would take this a step further and rework some of the shell directives to be more streamlined and avoid some specific design patterns.