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OpenOmics
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chrom-seek
An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
https://openomics.github.io/chrom-seek/
MIT License
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fix: handle tmpdir to frip rules, enforce tmpdir for pybedtools, mult…
#51
Closed
rroutsong
closed
3 weeks ago
rroutsong
commented
3 weeks ago
export $TMPDIR at frip rules
force pybedtools in
frip.py
to use $TMPDIR
multithread the pysam calls in
frip.py
rule changes to pass threads
use black to to format
frip.py
frip.py
to use $TMPDIRfrip.py
frip.py