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OpenOmics / chrom-seek

An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
https://openomics.github.io/chrom-seek/
MIT License
5 stars 2 forks source link

Bug fixes and updated annotations #54

Closed tovahmarkowitz closed 6 days ago

tovahmarkowitz commented 1 week ago

This pull request includes a bunch of bug fixes related to:

  1. DiffBind Rmd report erroring out when less than 10 differential peaks.
  2. DiffBind usage of summits=250 causing some positions to be negative with ATAC data.
  3. DiffBind CSV creation corrected to handle many potential contrasts.
  4. Genrich functionality with uropa.
  5. Rhesus macaque reference file usage.