It would be awesome if we had a script to automate the process of building reference files for different/new organisms, something where we could give it a minimal set of inputs (such as a genomic fasta file, annotation, and an optional blacklist, etc.) and it would handle the rest.
It would be awesome if we had a script to automate the process of building reference files for different/new organisms, something where we could give it a minimal set of inputs (such as a genomic fasta file, annotation, and an optional blacklist, etc.) and it would handle the rest.