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OpenOmics
/
weave
An awesome BCL demultiplexing and FastQ quality-control pipeline
https://openomics.github.io/weave/
MIT License
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Docs update
#37
rroutsong
closed
9 months ago
0
Skyline transfer
#36
rroutsong
closed
9 months ago
1
Updating link to tests badge
#35
skchronicles
closed
10 months ago
0
Downloading disambiguate reference files and alternative solutions
#34
skchronicles
opened
10 months ago
0
Add disambiguate tool to QC portion of the weave pipeline
#33
rroutsong
closed
10 months ago
0
Alternative KRAKEN/KAIJU databases from command line
#32
rroutsong
opened
10 months ago
0
fix: dragen pre-demuxed workflow pathing corrections
#31
rroutsong
closed
11 months ago
0
Testing and PR related fixes for weave 0.0.1
#30
rroutsong
closed
11 months ago
0
Singend bclconvert samplesheet
#29
rroutsong
closed
11 months ago
0
Init documentation
#28
rroutsong
closed
12 months ago
0
Ensure name transition from Dmux to weave
#27
rroutsong
closed
11 months ago
0
Documentation
#26
rroutsong
closed
11 months ago
0
Add option to run disambiguate or separate reads from two organisms (i.e. host vs. virus or host vs. parasite)
#25
skchronicles
closed
9 months ago
2
Master job and bigsky
#24
rroutsong
closed
1 year ago
0
Add cryptographic checksums for fastq.gz files
#23
rroutsong
opened
1 year ago
0
Kaiju: create Genus, Family, Order, Class output files
#22
skchronicles
closed
9 months ago
0
Update to latest version of multiqc
#21
rroutsong
opened
1 year ago
0
Add support bclconvert
#20
rroutsong
closed
11 months ago
1
Add support for single end sequencing
#19
rroutsong
closed
11 months ago
0
Make standalone illumnia sample sheet parser
#18
rroutsong
closed
11 months ago
0
Master job and bigsky
#17
rroutsong
closed
1 year ago
1
Transfer from pip packaging into git module type packaging
#16
rroutsong
closed
1 year ago
1
Seperate trimmed fastqc and fastqc from multiqc report
#15
rroutsong
opened
1 year ago
1
Add multiqc
#14
rroutsong
closed
1 year ago
2
enforce submitting master job to slurm
#13
rroutsong
closed
1 year ago
0
implement MultiQC in ngsqc pipeline
#12
rroutsong
closed
1 year ago
0
Add kaiju kraken
#11
rroutsong
closed
1 year ago
0
Conda2src
#10
rroutsong
closed
1 year ago
0
Up file latency wait time to 120s
#9
rroutsong
closed
1 year ago
0
Move node configurations to serializable file
#8
rroutsong
closed
1 year ago
0
Rename --pretend flag
#7
rroutsong
closed
1 year ago
0
Ngs qc qa workflow
#6
rroutsong
closed
1 year ago
0
Dry run action
#5
rroutsong
closed
1 year ago
0
initial Illumnia demultiplexing cli
#4
rroutsong
closed
1 year ago
0
begin the skeleton of rml green flag
#3
rroutsong
closed
1 year ago
1