Implement NeuroML 2 version of calcium pool mechanism

OpenSourceBrain / L5bPyrCellHayEtAl2011

Layer 5b Pyramidal cell - Hay et al. 2011

http://www.opensourcebrain.org/projects/l5bpyrcellhayetal2011

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Implement NeuroML 2 version of calcium pool mechanism #2

Open pgleeson opened 10 years ago

pgleeson commented 10 years ago

Need to make custom NML2 implementation which behaves identically to mod file impl: https://github.com/OpenSourceBrain/L5bPyrCellHayEtAl2011/blob/master/neuroConstruct/cellMechanisms/CaDynamics_E2_init_mod/CaDynamics_E2.mod

pgleeson commented 10 years ago

Can reuse custom Ca pool example from:

https://github.com/OpenSourceBrain/FarinellaEtAl_NMDAspikes/blob/master/neuroConstruct/cellMechanisms/cad2_NML2/cad2_NML2.nml

pgleeson commented 10 years ago

Working nml2 version of this channel is at https://github.com/OpenSourceBrain/L5bPyrCellHayEtAl2011/blob/master/neuroConstruct/cellMechanisms/CaDynamics_E2_NML2/CaDynamics_E2_NML2.nml

pgleeson commented 10 years ago

There remains the issue that the parameters decay & gamma are altered when this mechanism is placed on the soma/apical dendrites of the full L5PC cell. This is not yet correctly exported to NML2 when the cell morphology is exported.