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OpenSourceBrain / MiglioreEtAl14_OlfactoryBulb3D

3D model of the olfactory bulb (Migliore et al. 2014)
http://www.opensourcebrain.org/projects/miglioreetal14_olfactorybulb3d
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GCs do not appear to have position information #12

Closed pgleeson closed 8 years ago

pgleeson commented 8 years ago

From #6

@JustasB it could well be the case that the GCs are not given explicit positions, though it does look like it from the movie here

selection_026

They may be just randomly positioned inside the main ellipsoid, but this code suggests otherwise...

Note though that there is a dendrite on the GCs which isn't shown above.

Does the connectivity depend on the location of the GC?

Would be good to get Francesco to comment on this.

JustasB commented 8 years ago

This has been resolved. There is a lookup table and some functions that give the GC positions.

http://opensourcebrain.org/projects/d-olfactory-bulb-network/repository/revisions/master/show/NeuroML2/Networks?explorer=https%3A%2F%2Fraw.githubusercontent.com%2FJustasB%2FMig3DTest%2Fmaster%2FNeuroML2%2FNetworks%2FBulb_5MC_240GC.net.nml