Potential dataset: Allen Institute Mouse icephys data

[pgleeson]

One dataset shared on Dandi: https://gui.dandiarchive.org/#/dandiset/5eaa216d1fe11561ec13e9ed

Can be viewed with links like: https://nwbexplorer.opensourcebrain.org/nwbfile=https://girder.dandiarchive.org/api/v1/item/5eaa26191fe11561ec13e9fe/download

Can also be used with NWB Widgets:

@bendichter is there an example of an Allen dataset with the more complex unit/spiking info, as you were showing in NWBWidgets yesterday?

[bendichter]

@pgleeson AIBS has released neuropixel data, but it has not yet been ingested into DANDI. You can download these files with their API. See this notebook. I have a few files from them that I have altered a bit so I can read them with the latest version of pynwb (NWBWidgets and DANDI rely on pynwb). See this script.

[pgleeson]

Thanks for the tip @bendichter, I'll try it out.

BTW, do you have any idea when Allen is going to move to providing NWB2 for say their Cell Types database, or will that stay as NWB1 for released datasets?

[bendichter]

It's going to be NWB 2. We are working on that release with them now as well as other groups from the BICCN collaboration. Unclear when the release will be though.

Ben

On Fri, May 15, 2020, 5:15 AM Padraig Gleeson notifications@github.com wrote:

Thanks for the tip @bendichter https://github.com/bendichter, I'll try it out.

BTW, do you have any idea when Allen is going to move to providing NWB2 for say their Cell Types database, or will that stay as NWB1 for released datasets?

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[pgleeson]

@anhknguyen96 Can you pay particular attention to dandisets which contain Allen Institute data, as there will be a lot more dtaa coming down the line from them...

[anhknguyen96]

sure