create test_compatibility_biosimulators for first example in SBML test suite

OpenSourceBrain / SBMLShowcase

OSB showcase of interactions between SBML and NeuroML

http://www.opensourcebrain.org/projects/sbmlshowcase

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create test_compatibility_biosimulators for first example in SBML test suite #49

Closed stellaprins closed 1 month ago

stellaprins commented 2 months ago

Start with the first example (in 00001) from the SBML test suite and create a test_compatibility_biosimulators results table.

[x] create a test_00001 subfolder in the test_suite folder

test_00001 folder should contain:

[x] highest level SBML and SED-ML files (00001)
[x] test_compatibility_biosimulators results table

to do:

[x] fix broken plot links
[x] remove test_00002 and test_00003 folders before merging

stellaprins commented 2 months ago

I'm not aware of any easy way to determine whether a given file is an SBML or SED-ML file (see discussion here). Previously we decided to use the file extensions to determine the file format (i.e. .sedml and .sbml for SED-ML and SBML files). However, all files in the test suite have .xml extensions. Instead of catogarizing these as pass or FAIL I've decided to categorize compatility (Compat column) as 'unsure' for files with .xml extensions.