Closed stellaprins closed 1 month ago
I've updated the engine dict, making the changes we discussed today for Brian2 and NetPyNE.
Engine information was taken from the biosimulators docs (here). E.g. the Brian2 page lists the following compatibility:
COMBINE/OMEX archives that describe one or more simulation experiments (in SED-ML format) of one or more models (in NeuroML / LEMS format).
I realised I put a placeholder for the Smoldyn compatible formats because I could not find them. From the documentation here, I gather that any model model format is Smoldyn compatible when it is packaged as an omex file with a valid SED-ML file? @pgleeson @sanjayankur31, do you know whether this is correct?
@stellaprins I get the impression that the only real format Smoldyn supports is its own, so an omex file with a sed-ml pointing to a smoldyn model is fine for it, but anything else it will fail. I think Smoldyn can export to sbml, but that's not relevant in this scenario.
Thanks @pgleeson! Will update the engines dict.
pass
when running valid omex files created using SBML and SED-ML files. Check whether this is the case.