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OpenSourceBrain / redmine

This is a customised version of redmine for the Open Source Brain website
http://www.opensourcebrain.org
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OSB models failing in visualization #135

Closed adrianq closed 9 years ago

adrianq commented 9 years ago
adrianq commented 9 years ago

sphersoma model will be solved once the new version of geppetto is release

adrianq commented 9 years ago

17.CNG.swc.nml fixed. When file begins with a number a letter is added at the beginning otherwise js fails

adrianq commented 9 years ago

The exception in KA channel on the Gran cell layer model has to do with the org.neuroml.export lib. It has been fixed in the lib but it won't be fixed in OSB until the export lib is released and added to geppetto maven repo. I leave this issue open to be sure I check it has been fixed once the new version of the export lib is released.

pgleeson commented 9 years ago

Both these fairly simple models are giving errors:

http://www.opensourcebrain.org/projects/cerebellum3ddemo?explorer=https%3A%2F%2Fraw.github.com%2FOpenSourceBrain%2FCerebellum3DDemo%2Fmaster%2FNeuroML2%2FCerebellumNoConns.net.nml

The above has no conns this has a few hundred:

http://www.opensourcebrain.org/projects/cerebellum3ddemo?explorer=https%3A%2F%2Fraw.github.com%2FOpenSourceBrain%2FCerebellum3DDemo%2Fmaster%2FNeuroML2%2FCerebellum3DDemo.net.nml

pgleeson commented 9 years ago

For the first I get a "Rats..".

selection_628

Then a view of the network at too expanded a density (or, the cells themselves are too small):

selection_627

It should look something like this:

selection_192

adrianq commented 9 years ago

Fixed in Geppetto. We were not parsing the includes tags of type (<include></include>) properly