OSM Proposal to the Open Science Prize

MedChemProf commented 8 years ago

I am starting a thread regarding the OSM's submission to the Open Science Prize. The following is a link to a shared Google Drive folder ( https://drive.google.com/open?id=0B6PPGQnT9f4FLXFlZmluLUFTQWc ). The folder contains: 1) Rough Draft / Skeleton of the Proposal 2) Team Information Document (each of the proposal contributors will need to complete for inclusion in the proposal when I submit.) 3) To-Do List / Task Completion Tracker 4) Supporting Documents Folder (Open Science Prize Guidelines, FAQ, and recording of Web Meeting discussing the Open Science Prize.) Looking forward to everyones input since we are on a tight timeline. I have already made some notes in the proposal itself for needed information from the group. Thanks.

MedChemProf commented 8 years ago

@mattodd I saw that you tweeted about creating a Slack channel for the OSM. Did you post the channel name?

mattodd commented 8 years ago

Yes, sorry, corrected version coming hopefully in a moment.

On 29 February 2016 at 23:28, Chase Smith notifications@github.com wrote:

@mattodd https://github.com/mattodd It appears you moved the PubChem Letter to the trash on the shared site. Was that an error or are you going to replace it with another? Thanks. Also, I can work with the links that @lpatiny https://github.com/lpatiny provided to finish off the proposal.

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MATTHEW TODD | Associate Professor School of Chemistry | Faculty of Science

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lpatiny commented 8 years ago

Well the ELN for us is “just” a view in the github.com/npellet/visualizer project so it is currently not really a project by itself.

We just have a github project for tracking the issues.

https://github.com/cheminfo/eln-couch https://github.com/cheminfo/eln-couch

But the real link to provide is always http://eln.cheminfo.org http://eln.cheminfo.org/

On Feb 29, 2016, at 1:24 PM, Mat Todd notifications@github.com wrote:

OK, but can we call the ELN something ("Patinage"?) and link to one most relevant source? It'd be useful to try to do both, just to make it easier for the referees to read and check.

On 29 February 2016 at 20:00, lpatiny notifications@github.com wrote:

The lab notebook is based on many projects. Among them: http://github.com/npellet/visualizer <http://github.com/npellet/visualizer

https://github.com/cheminfo-js/openchemlib-extended < https://github.com/cheminfo-js/openchemlib-extended> https://github.com/cheminfo/chemcalc-js < https://github.com/cheminfo/chemcalc-js>

On Feb 28, 2016, at 2:21 PM, Chase Smith notifications@github.com wrote:

Only open issues at the moment are: 1) Is there a 'name' of the ELN at http://eln.cheminfo.org/ < http://eln.cheminfo.org/> and where would some one look for the source code @mattodd https://github.com/mattodd @lpatiny < https://github.com/lpatiny> 2) Can the video be placed in the shared folder for me to retrieve and upload or should I just try and capture it from the youtube link? @alintheopen https://github.com/alintheopen Thanks

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MedChemProf commented 8 years ago

@mattodd @lpatiny The one problem I have with that link is that it only works with Chrome which the reviewers may not use while evaluating the proposal.

drc007 commented 8 years ago

"OK, but can we call the ELN something ("Patinage"?) "

I'd suggest something that might be easier to associate with a Lab Notebook, "MyResearch", "Discoveries" etc.

mattodd commented 8 years ago

We may have to recommend its use here and say that with Prize support it is the intention that Firefox will be supported in the future?

On 29 February 2016 at 23:50, Chase Smith notifications@github.com wrote:

@mattodd https://github.com/mattodd @lpatiny https://github.com/lpatiny The one problem I have with that link is that it only works with Chrome which the reviewers may not use while evaluating the proposal.

— Reply to this email directly or view it on GitHub https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/371#issuecomment-190196958 .

MATTHEW TODD | Associate Professor School of Chemistry | Faculty of Science

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drc007 commented 8 years ago

You should say you will aim to support all modern desktop and mobile browsers.

On 29 Feb 2016, at 12:53, Mat Todd notifications@github.com wrote:

We may have to recommend its use here and say that with Prize support it is the intention that Firefox will be supported in the future?

On 29 February 2016 at 23:50, Chase Smith notifications@github.com wrote:

@mattodd https://github.com/mattodd @lpatiny https://github.com/lpatiny The one problem I have with that link is that it only works with Chrome which the reviewers may not use while evaluating the proposal.

— Reply to this email directly or view it on GitHub https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/371#issuecomment-190196958 .

MATTHEW TODD | Associate Professor School of Chemistry | Faculty of Science

THE UNIVERSITY OF SYDNEY Rm 519, F11 | The University of Sydney | NSW | 2006 T +61 2 9351 2180 | F +61 2 9351 3329 | M +61 415 274104 E matthew.todd@sydney.edu.au | W http://sydney.edu.au/science/people/matthew.todd.php W http://opensourcemalaria.org/ | W http://opensourcetb.org/ | W http://opensourcepharma.net/

CRICOS 00026A This email plus any attachments to it are confidential. Any unauthorised use is strictly prohibited. If you receive this email in error, please delete it and any attachments. — Reply to this email directly or view it on GitHub https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/371#issuecomment-190197605.

MedChemProf commented 8 years ago

I changed the phrasing to: "A prototype of the new ELN that will be adapted to run SCINDR is already online at http://eln.cheminfo.org/ (requires the use the ‘Google Chrome’ browser for the current version. The aim will be to eventually support all modern web browsers)."

lpatiny commented 8 years ago

We should probably explicitly specify it next to the link. We plan to make it compatible with Edge and possibly Firefox but Safari is definitely excluded because apple is ages behind at the point of view of implementation of javascript standards.

On Feb 29, 2016, at 1:50 PM, Chase Smith notifications@github.com wrote:

@mattodd https://github.com/mattodd @lpatiny https://github.com/lpatiny The one problem I have with that link is that it only works with Chrome which the reviewers may not use while evaluating the proposal.

— Reply to this email directly or view it on GitHub https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/371#issuecomment-190196958.

MedChemProf commented 8 years ago

Complete proposal has been submitted (Executive Summary; Proposal; Team Information; Video; and Letters of Support) @mattodd @alintheopen @cdsouthan @drc007 capture

mattodd commented 8 years ago

Congrats everyone, it's a great proposal that will lead to something genuinely useful if funded.

On 1 March 2016 at 06:27, Chase Smith notifications@github.com wrote:

Complete proposal has been submitted (Executive Summary; Proposal; Team Information; Video; and Letters of Support) @mattodd https://github.com/mattodd @alintheopen https://github.com/alintheopen @cdsouthan https://github.com/cdsouthan @drc007 https://github.com/drc007 [image: capture] https://cloud.githubusercontent.com/assets/14179120/13406258/874650a8-def0-11e5-8729-7b038c9eb3ce.PNG

— Reply to this email directly or view it on GitHub https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/371#issuecomment-190346112 .

MATTHEW TODD | Associate Professor School of Chemistry | Faculty of Science

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Daniel-Mietchen commented 8 years ago

I just noticed that the HTTP link doesn't "work" in FireFox, but the HTTPS link does:

MedChemProf commented 8 years ago

Thanks for spotting that. I noticed the problem, but did not have a solution. In the proposal I added a note to view the link in Chrome presently and other modern browsers would be added later. I also added a screen shot of the ELN into the proposal to further cover the issue.

alintheopen commented 8 years ago

Prize has been submitted, so closing. Other related discussions #372 are ongoing.

OpenSourceMalaria / OSM_To_Do_List

OSM Proposal to the Open Science Prize #371