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Some suggestion for other taxa to constrain search for OTU mapping #36

Closed Katzlab closed 8 years ago

Katzlab commented 10 years ago

Would be good to get more comments but here is starting list:

Amoebozoa Archaeplastida, plus nested clades rhodophyceae, glaucophyta, chloroplastida Excavata Opisthokonta, plus nested clades Fungi and Metazoa SAR: plus nested clades Alveolata, Stramenopila, Rhizaria (Each of which could be nested but this may be sufficient, for now)

Archaea: might not need subnesting but here are some major clades Crenarchaeota Euryarchaeota Korarchaeota Nanoarchaeota Thaumarchaeota

Bacteria: might not need subnesting but here are some major clades Acidobacteria Actinobacteria Aquificae Armatimonadetes Bacteroidetes Candidate divisions Chlamydiae Chlorobi Chloroflexi Chrysiogenetes Cyanobacteria Deferribacteres Deinococcus-Thermus Dictyoglomi Elusimicrobia Fibrobacteres Firmicutes Fusobacteria Gemmatimonadetes Lentisphaerae Nitrospirae Planctomycetes Proteobacteria Spirochaetae Synergistetes TA06 Tenericutes Thermodesulfobacteria Thermotogae Verrucomicrobia

jar398 commented 8 years ago

This is a TNRS issue so will route this to taxomachine and close it here. Continued at https://github.com/OpenTreeOfLife/taxomachine/issues/new