search

OpenTreeOfLife / feedback

No code -- just an issue tracker for general feedback (sent here via GitHub's issues API)
1 stars 0 forks source link

Acinonyx pardinensis is extinct #578

Closed hyanwong closed 4 months ago

hyanwong commented 9 months ago

E.g. see refs in https://en.wikipedia.org/wiki/Acinonyx_pardinensis

================================================ Metadata Do not edit below this line
Author Yan Wong
Upvotes 0
URL https://tree.opentreeoflife.org/opentree/argus/opentree14.9@ott7656114/Acinonyx-pardinensis
Target node label Acinonyx pardinensis
Synthetic tree id opentree14.9
Synthetic tree node id ott7656114
Source tree id(s)
Open Tree Taxonomy id
Supporting reference https://doi.org/10.1016%2Fj.quascirev.2011.05.024
davidebbo commented 9 months ago

Doing some further analysis (and working with @hyanwong), there is a large number of species (11651) that are marked as extinct in Wikidata, but not in OpenTree Taxonomy. I have dumped the full list here. Each row has the Wikdata ID, the OTT and the species name.

While we cannot be sure that Wikidata is correct, many do appear to be.

mtholder commented 4 months ago

Thanks for providing that list of IDs @davidebbo This should be fixed by https://github.com/OpenTreeOfLife/edOTTs/commit/c063ba01876156120edc4f655998114343ce3b23 when we deploy the next taxonomy.

mtholder commented 4 months ago

https://github.com/OpenTreeOfLife/edOTTs/commit/4006d126e0a288e521f495bc8ee5f54169edb9cb is the commit that will deal with the 11,651 taxa

davidebbo commented 4 months ago

Great, thank you @mtholder!