OpenTreeOfLife / opentree

Opentree browsing and curation web site. For overarching or cross-repo concerns, please see the 'germinator' repo.
http://tree.opentreeoflife.org/
BSD 2-Clause "Simplified" License
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In the conflict analysis, unnamed nodes look like `OTT: {mrcaottXottY}` #1291

Open bredelings opened 1 year ago

bredelings commented 1 year ago

image

  1. The OTT: part seems incorrect? We could just write "unnamed node mrcaottXottY" or something.

  2. Less important, but if you click on the link and visit the node in the synth tree, we generate a more useful name like: "[Thermococci + Korarchaeota]"

https://tree.opentreeoflife.org/opentree/argus/opentree13.4@mrcaott6666ott25307

I'm not sure if the conflict analysis result contains enough info to construct these more-interesting names though. But if it did, we could write something like "Thermococci + Koracheota (mrcaott666ott25307)"

bredelings commented 1 year ago

Possibly I could just make otcetera provide more interesting witness names for mctaottXottY nodes.

 "node902033": {
  "status": "conflicts_with",
  "witness": [
   "mrcaott1100ott1732"
  ],
  "witness_name": [
   null
  ]
 },