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OpenTreeOfLife / ot-ansible

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locations of things #5

Open kcranston opened 4 years ago

kcranston commented 4 years ago

Looking at locations of where things get cloned / downloaded / installed / etc:

Is this the same structure that we want going forward with ansible?

bredelings commented 4 years ago

For the version with ws enabled, we have

Applications/otcetera/otcetera -- source Applications/otcetera/build -- build Applications/otcetera/local -- install

I'd like to change this to:

Applications/otcetera/git -- source Applications/otcetera/build -- build Applications/otcetera/local -- install

The layout for rested seems similar.

There are a number of reasonable ways to tweak this, what were you thinking?  I guess the main thing is to keep the source, build, and install directories different, and to use separate install directories for restbed and otcetera. Installing C++ applications seems different than installing python applications.

-BenRI

On 6/1/20 9:16 AM, Karen Cranston wrote:

Looking at locations of where things get cloned / downloaded / installed / etc:

*

|$HOME/repo| directory where we clone + install peyotl,
ws-wrapper, opentree, phylesystem, amendments, collections;
created in functions.sh
<https://urldefense.com/v3/__https://github.com/OpenTreeOfLife/germinator/blob/1def898e2181250385b86402cce4a432409927f3/deploy/setup/functions.sh__;!!OToaGQ!7snU1nzGQ1HO3xHyVIUXJfkuJ9Z_R5l514gzfJ04JJJPx3fBuiPGaMLnS6wAGIW598g9uBY$>
and used in install-api.sh
<https://urldefense.com/v3/__https://github.com/OpenTreeOfLife/germinator/blob/38cb084f8c39c2ed895090b794c8589038a10fe8/deploy/setup/install-api.sh__;!!OToaGQ!7snU1nzGQ1HO3xHyVIUXJfkuJ9Z_R5l514gzfJ04JJJPx3fBuiPGaMLnS6wAGIW5g3nndys$>
and install-common.sh
<https://urldefense.com/v3/__https://github.com/OpenTreeOfLife/germinator/blob/78c800288631fa4e06efa160e1c3b1c06049cf5b/deploy/setup/install-common.sh__;!!OToaGQ!7snU1nzGQ1HO3xHyVIUXJfkuJ9Z_R5l514gzfJ04JJJPx3fBuiPGaMLnS6wAGIW5rU5suVs$>

*

|$HOME/Applications| directory where we clone and install
otcetera, restbed in install-otcetera.sh
<https://urldefense.com/v3/__https://github.com/OpenTreeOfLife/germinator/blob/1def898e2181250385b86402cce4a432409927f3/deploy/setup/install-otcetera.sh__;!!OToaGQ!7snU1nzGQ1HO3xHyVIUXJfkuJ9Z_R5l514gzfJ04JJJPx3fBuiPGaMLnS6wAGIW5KrIpOfU$>

Is this the same structure that we want going forward with ansible?

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mtholder commented 4 years ago

I think we can go with either. Having both was (I think) an attempt to make sure that experiments with ansible not over-writing germinator deployments. I think that was @bredelings . So, I don't think we need both. On "nexttree" we (read "@mtholder") had a different directory for building the synth tree and a different one for serving the tree. Neither were repo or Applications)

We might want to maintain the convention of having a dir for synth and another dir for serving the tree. but i don't care what the names are.

EDIT: just noting that I wrote this before seeing Ben's post. so it is a response to Karen.

kcranston commented 4 years ago

From conversation on gitter, going to keep everything that we download (+install) from github in repos. The build dir(s) should not be inside the source code repos (either sister to, or in a separate parent, perhaps Applications).

kcranston commented 4 years ago

I think I left my comment without refreshing this page. I like both @bredelings suggestion about separating the c++ apps and also @mtholder structure on nexttree.

On dev / production, ls $HOME:

cpp_apps - otcetera and restbed, each in their own dir with the subdirectories suggested by @bredelings repos - all other repos downloads - destination for various wgets unpacked - destination for unpacked tarballs

on nexttree, ls $HOME:

synth_dir - everything related to building the synthetic tree ws_dir - everything related to serving the tree

Directory structures within ws_dir will be same / similar to $HOME on dev/prod.

bredelings commented 4 years ago

Sounds good. If you want to move the git source for cpp apps under repo, so that ls otcetera would show build/ and local/ that seems equally good. Or I guess you could make a symlink from otcetera/git to repos/otcetera....... OK, enough bike-shedding!