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OpenTreeOfLife
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otcetera
C++20 lib for manipulations of phylogenetic trees and supertree operations
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Change default default for include_all_node_labels to true.
#124
snacktavish
opened
3 hours ago
0
add API option to download simplified newick
#123
mtholder
opened
3 months ago
0
Broken taxon weirdness
#122
snacktavish
opened
7 months ago
0
support for newer, but backward compatible taxonomy OR better error message
#121
mtholder
opened
11 months ago
0
Taxonomy diff maker
#120
bredelings
closed
1 year ago
0
New logging framework based on g3log
#119
bredelings
closed
1 year ago
0
avoid inverting taxa that have the same set of phylo-sampled descendants
#118
mtholder
closed
1 year ago
3
Parent-offspring taxon reversal in synth
#117
snacktavish
closed
1 year ago
3
taxon forwards missing from synth
#116
snacktavish
opened
2 years ago
3
differentiate support for tips in study
#115
snacktavish
opened
2 years ago
0
Solve can emit dd
#114
mtholder
closed
2 years ago
0
include amendents for mapping on the fly
#113
snacktavish
opened
2 years ago
0
add option for subtree to simplify names on the fly
#112
mtholder
opened
2 years ago
0
synth node mrca labels not returned
#111
snacktavish
opened
2 years ago
18
If you give a broken ottID to node_info, it returns the MRCA
#110
bredelings
opened
2 years ago
0
TNRS approximate matching on multiple names not working if any name is an exact match.
#109
mtholder
opened
2 years ago
0
Development
#108
mtholder
closed
3 years ago
1
Add github actions tests for otcetera.
#107
bredelings
closed
3 years ago
0
Easylogging is out-of-date, but new version crashes
#106
bredelings
opened
3 years ago
2
Refactor finding ids
#105
bredelings
closed
3 years ago
0
taxon info needs to report suppressed from synth correctly
#104
mtholder
opened
3 years ago
3
Make the otcetera web services forward OTT ids in names like `ott12345`
#103
bredelings
closed
3 years ago
0
Taxon forwards in tree_of_life calls
#102
snacktavish
closed
3 years ago
4
conflict-status crashes when there are no mapped tips
#101
bredelings
closed
3 years ago
0
otcetera segfaults when killed with ^C
#100
bredelings
opened
3 years ago
0
Change the JSON for conflicting nodes.
#99
bredelings
closed
4 years ago
0
Faster search branch: fix ctrie SPACE bug and speed up fuzzy matching
#98
bredelings
closed
4 years ago
0
Development
#97
bredelings
closed
4 years ago
2
TNRS note
#96
snacktavish
closed
4 years ago
7
internal server error
#95
mtholder
closed
3 years ago
2
Pass in newick to conflict api?
#94
snacktavish
closed
3 years ago
7
Add otc-prune-clean tool to clean newick trees using otcetera
#93
bredelings
closed
4 years ago
0
Extinct flag arguson
#92
bredelings
closed
4 years ago
1
Mod annotate synth
#91
mtholder
closed
10 months ago
0
Bump subtree limit for newick (but not arguson) from 25k -> 100k tips.
#90
bredelings
closed
4 years ago
0
Mod annotate synth
#89
mtholder
closed
4 years ago
0
Phyloref
#88
bredelings
closed
4 years ago
0
support download on tree with taxonomy-only stripped
#87
mtholder
opened
4 years ago
0
more expansive supporting_studies attribute in subtree
#86
mtholder
opened
4 years ago
0
No fuzzy match db
#85
mtholder
closed
4 years ago
1
Induced subtree call fails on pruned taxa
#84
snacktavish
opened
4 years ago
8
Fix the ability to build without webservices.
#83
bredelings
closed
4 years ago
1
Bump rebase manual
#82
mtholder
closed
4 years ago
0
Newerjson
#81
mtholder
closed
4 years ago
0
Add the ability to run ws tests against different synth trees.
#80
bredelings
closed
4 years ago
0
Conflict crash
#79
bredelings
closed
3 years ago
2
Make ccache work with clang in travis
#78
bredelings
opened
4 years ago
0
Create a new testcase so we can test info about contesting trees.
#77
bredelings
opened
4 years ago
0
Fix travis
#76
bredelings
closed
4 years ago
1
Fix py_env failing in travis tests.
#75
bredelings
opened
4 years ago
0
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