search

OpenTreeOfLife / oti

indexing service for the OpenTreeOfLife nexson repository
Other
1 stars 0 forks source link

class has disappeared, breaking the index_current_repo.py script #31

Closed jar398 closed 10 years ago

jar398 commented 10 years ago

curl -X POST http://127.0.0.1:7478/db/data/ext/studies/graphdb/index_studies -H "content-type:application/json" -d '{"urls": ["http://ot17.opentreeoflife.org/phylesystem/v1/../default/v1/study/pg_82.json"]}' { "message" : "org/opentree/oti/DatabaseManager", "exception" : "NoClassDefFoundError", "fullname" : "java.lang.NoClassDefFoundError", "stacktrace" : [ "org.opentree.oti.plugins.studies.index_studies(studies.java:185)", "java.lang.reflect.Method.invoke(Method.java:606)", "org.neo4j.server.plugins.PluginMethod.invoke(PluginMethod.java:57)", "org.neo4j.server.plugins.PluginManager.invoke(PluginManager.java:168)", "org.neo4j.server.rest.web.ExtensionService.invokeGraphDatabaseExtension(ExtensionService.java:300)", "org.neo4j.server.rest.web.ExtensionService.invokeGraphDatabaseExtension(ExtensionService.java:122)", "java.lang.reflect.Method.invoke(Method.java:606)", "org.neo4j.server.rest.security.SecurityFilter.doFilter(SecurityFilter.java:112)" ] }(venv)opentree@ip-10-17-6-84:~$ (venv)opentree@ip-10-17-6-84:~$

jar398 commented 10 years ago

I don't get it... it's saying class DatabaseManager isn't found, but it's there in the sources, which got recompiled, and I checked the .jar file and it's in there: 13841 2014-09-23 23:53 org/opentree/oti/DatabaseManager.class

jar398 commented 10 years ago

I deleted the oti repo (clone) and redid push.sh. Now it's working. I hate this kind of thing. The whole point of computers is reproducibility.

chinchliff commented 10 years ago

That's the maven bug that Joseph and I were complaining about a few days ago. No idea what causes it.

On Thursday, September 25, 2014, Jonathan A Rees notifications@github.com wrote:

Closed #31 https://github.com/OpenTreeOfLife/oti/issues/31.

— Reply to this email directly or view it on GitHub https://github.com/OpenTreeOfLife/oti/issues/31#event-170501571.