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OpenTreeOfLife / peyotl

python library for interacting with Open Tree of Life resources
BSD 2-Clause "Simplified" License
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Import nexml fails #183

Open snacktavish opened 9 months ago

snacktavish commented 9 months ago

If I export nexml from the curator and then try to import it into a new study I get the error: {"description": "'Repeated trees element id "trees1"'", "error": 1}

It's sort of an unusual thing to want to do - but for example it's handy to re-use an OTU mapping scheme that took a long time to edit. And I'm not sure if our import checker is too strict, or if we're not exporting legal nexml.

jimallman commented 9 months ago

That's a pretty clear error message, if it's accurate. Can you post or point to the nexml, or does it happen for every exported study?

rvosa commented 9 months ago

I mean, if this is literally about XML IDs being used multiple times, then that indeed shouldn't validate.

On Tue, Dec 19, 2023 at 1:57 AM Jim Allman @.***> wrote:

That's a pretty clear error message, if it's accurate. Can you post or point to the nexml, or does it happen for every exported study?

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