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Open Tree Reference Taxonomy (OTT) tools
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Streptophytina #24

Closed jar398 closed 10 years ago

jar398 commented 10 years ago

On Thu, Mar 13, 2014 at 2:57 PM, bryan drew bdrewfb@gmail.com wrote:

One thing I noticed that should probably be changed is that Streptophytina should be eliminated as a designation, and the three main clades within Streptophytina (Charophyceae, Embryophyta, Coleochaetophyceae) should be collapsed back to Streptophyta.

I'm basing this claim off of the recent paper:

Ruhfel BR, Gitzendanner MA, Soltis PS, Soltis DE, Burleigh JG (2014) From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. BMC Evolutionary Biology 14: 23.

doi:10.1186/1471-2148-14-23

Bryan

jar398 commented 10 years ago

Should be fixed in OTT 2.5 draft 1

jar398 commented 10 years ago

Please see https://github.com/OpenTreeOfLife/feedback/issues/8

jar398 commented 10 years ago

(Copying this reply into the issue tracker) I'm sorry, I misread and got this completely wrong. I've changed the script.

Here are some of the children of Streptophytina; these will all become children of Streptophyta.

397462 | 372049 | Charales | order | ncbi:204509,gbif:626,irmng:10964 | | sibling_higher,sibling_lower | 4734105 | 372049 | Characiaceae | family | gbif:6344,irmng:115998 | | sibling_higher,sibling_lower,tattered | 10210 | 372049 | Tracheophyta | no rank | ncbi:58023 | | | 56601 | 372049 | Marchantiophyta | phylum | ncbi:3195,gbif:9,irmng:1179 | | sibling_lower | 246594 | 372049 | Bryophyta | phylum | ncbi:3208,gbif:35,irmng:139 | | sibling_lower | 738980 | 372049 | Anthocerotophyta | phylum | ncbi:13809,gbif:13 | | sibling_lower | 973646 | 372049 | Coleochaetales | order | ncbi:204510,gbif:633,irmng:10695 | | sibling_higher,sibling_lower | 5151664 | 372049 | embryophyte sp. Misuzugoke-1 | species | ncbi:232235 | | unclassified_inherited |

jar398 commented 10 years ago

Repaired in next taxonomy build. 5342313 | 916750 | Embryophyta | no rank | ncbi:3193 | | |