This PR mostly has changes related to statistics, with additional automation and a bug fix in the coverage measurement script. Some of the changes in alignment statistics (between draft3 and draft6) are a bit puzzling; given that the biggest change was the addition of separation taxa, I might have thought they'd go in the other direction in some cases. But the taxonomy checks out, so I'm not going to worry about it.
There's also a new paragraph added to the end of the discussion section.
This PR mostly has changes related to statistics, with additional automation and a bug fix in the coverage measurement script. Some of the changes in alignment statistics (between draft3 and draft6) are a bit puzzling; given that the biggest change was the addition of separation taxa, I might have thought they'd go in the other direction in some cases. But the taxonomy checks out, so I'm not going to worry about it.
There's also a new paragraph added to the end of the discussion section.