Add one or more context tests

[jar398]

e.g. curl -X POST http://devapi.opentreeoflife.org/v2/tnrs/match_names -H "content-type:application/json" -d '{"names": ["Hylobates"], "context_name": "Mammals"}' should yield Hylobates.

(currently doesn't on dev, see https://github.com/OpenTreeOfLife/feedback/issues/147 )

[pmidford]

curl -X POST http:/devapi.opentreeoflife.org/v2/tnrs/infer_context -H "content-type:application/json" -d '{"names": ["Pan","Homo","Mus","Bufo"]}' is also currently broken: { "context_name" : "All life", "context_ott_id" : 805080, "ambiguous_names" : [ ] } instead of: { "context_name" : "Tetrapods", "context_ott_id" : 229562, "ambiguous_names" : [ ] }

[hyanwong]

Yes, it's not just Hylobates or primates. Over 6 thousand Passerines are broken too (do not appear under context:Vertebrates). From the top of my list, none of the following return a match, unless under context: 'All Life' (I can provide the full list if need be)

'Abroscopus albogularis', 'Abroscopus schisticeps', 'Abroscopus superciliaris', 'Acanthagenys rufogularis', 'Acanthidops bairdii', 'Acanthisitta chloris', 'Acanthisittidae', 'Acanthiza apicalis', 'Acanthiza chrysorrhoa', 'Acanthiza ewingii', 'Acanthiza inornata', 'Acanthiza iredalei', 'Acanthiza katherina', 'Acanthiza lineata', 'Acanthiza murina', 'Acanthiza nana', 'Acanthiza pusilla', 'Acanthiza reguloides', 'Acanthiza robustirostris', 'Acanthiza uropygialis', 'Acanthizidae', 'Acanthorhynchus superciliosus', 'Acanthorhynchus tenuirostris', 'Acanthornis magna', 'Achaetops pycnopygius', 'Acridotheres albocinctus', 'Acridotheres cinereus', .... 'Zosterops stalkeri', 'Zosterops stresemanni', 'Zosterops tenuirostris', 'Zosterops vaughani', 'Zosterops vellalavella', 'Zosterops wallacei', 'Zosterops xanthochroa',

[hyanwong]

Works for http://api.opentreeoflife.org/v2/tnrs/match_names, with OTT 2.9d12. So it's something to do with the dev servers

[jar398]

Right, the production server got an earlier, better working version of the taxomachine database. It doesn't have some of the TNRS taxon visibility changes we wanted, however. This is definitely still work in progress.

[hyanwong]

Oh yes, I see: api.opentreeoflife still has this problem: https://github.com/OpenTreeOfLife/feedback/issues/147 . Damn. Was hoping that was fixed. Is this an easy one?

[jar398]

No, this is not an easy one. This is the Big Mysterious Taxomachine Bug

104, that I just mentioned in a different thread, which has yet to be

solved. I think Joseph and/or Karen are working on this.

[hyanwong]

OK, thanks for the pointer. I'll just have to wait then.

[jar398]

104 is done. time to review.