Some suggestion for other taxa to constrain search for OTU mapping #36
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Katzlab opened this Issue on May 21, 2014 · 0 comments
None yet
Would be good to get more comments but here is starting list:
Amoebozoa
Archaeplastida, plus nested clades rhodophyceae, glaucophyta, chloroplastida
Excavata
Opisthokonta, plus nested clades Fungi and Metazoa
SAR: plus nested clades Alveolata, Stramenopila, Rhizaria (Each of which could be nested but this may be sufficient, for now)
Archaea: might not need subnesting but here are some major clades
Crenarchaeota
Euryarchaeota
Korarchaeota
Nanoarchaeota
Thaumarchaeota
Bacteria: might not need subnesting but here are some major clades
Acidobacteria
Actinobacteria
Aquificae
Armatimonadetes
Bacteroidetes
Candidate divisions
Chlamydiae
Chlorobi
Chloroflexi
Chrysiogenetes
Cyanobacteria
Deferribacteres
Deinococcus-Thermus
Dictyoglomi
Elusimicrobia
Fibrobacteres
Firmicutes
Fusobacteria
Gemmatimonadetes
Lentisphaerae
Nitrospirae
Planctomycetes
Proteobacteria
Spirochaetae
Synergistetes
TA06
Tenericutes
Thermodesulfobacteria
Thermotogae
Verrucomicrobia
Some suggestion for other taxa to constrain search for OTU mapping #36 Open Katzlab opened this Issue on May 21, 2014 · 0 comments None yet
Would be good to get more comments but here is starting list:
Amoebozoa Archaeplastida, plus nested clades rhodophyceae, glaucophyta, chloroplastida Excavata Opisthokonta, plus nested clades Fungi and Metazoa SAR: plus nested clades Alveolata, Stramenopila, Rhizaria (Each of which could be nested but this may be sufficient, for now)
Archaea: might not need subnesting but here are some major clades Crenarchaeota Euryarchaeota Korarchaeota Nanoarchaeota Thaumarchaeota
Bacteria: might not need subnesting but here are some major clades Acidobacteria Actinobacteria Aquificae Armatimonadetes Bacteroidetes Candidate divisions Chlamydiae Chlorobi Chloroflexi Chrysiogenetes Cyanobacteria Deferribacteres Deinococcus-Thermus Dictyoglomi Elusimicrobia Fibrobacteres Firmicutes Fusobacteria Gemmatimonadetes Lentisphaerae Nitrospirae Planctomycetes Proteobacteria Spirochaetae Synergistetes TA06 Tenericutes Thermodesulfobacteria Thermotogae Verrucomicrobia