jar398
commented
10 years ago May I suggest that you only assume that the tester has virtualenv and pip installed. (That would have to be documented in TESTING.md and/or suggested by the script itself if which virtualenv turns up empty.) Then any tests in any repo can install libraries without sudo by using virtualenv. Here's what I did:
(venv)bash-3.2$ which virtualenv /usr/local/bin/virtualenv (venv)bash-3.2$ virtualenv venv New python executable in venv/bin/python Installing setuptools, pip...done. (venv)bash-3.2$ . venv/bin/activate (venv)(venv)bash-3.2$ pip install nose Downloading/unpacking nose Downloading nose-1.3.4.tar.gz (277kB): 277kB downloaded Running setup.py (path:/Users/jar/a/NESCent/ot/repo/taxomachine/venv/build/nose/setup.py) egg_info for package nose
no previously-included directories found matching 'doc/.build'Installing collected packages: nose Running setup.py install for nose
no previously-included directories found matching 'doc/.build'
Installing nosetests script to /Users/jar/a/NESCent/ot/repo/taxomachine/venv/bin
Installing nosetests-2.7 script to /Users/jar/a/NESCent/ot/repo/taxomachine/venv/binSuccessfully installed nose Cleaning up... (venv)(venv)bash-3.2$ which nosetests /Users/jar/a/NESCent/ot/repo/taxomachine/venv/bin/nosetests (venv)(venv)bash-3.2$ ./test.sh Failure: ImportError (No module named requests) ... ERROR
ERROR: Failure: ImportError (No module named requests)
Traceback (most recent call last):
File "/Users/jar/a/NESCent/ot/repo/taxomachine/venv/lib/python2.7/site-packages/nose/loader.py", line 414, in loadTestsFromName
addr.filename, addr.module)
File "/Users/jar/a/NESCent/ot/repo/taxomachine/venv/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/Users/jar/a/NESCent/ot/repo/taxomachine/venv/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/Users/jar/a/NESCent/ot/repo/taxomachine/tests/curl_tests.py", line 1, in
Ran 1 test in 0.001s
FAILED (errors=1) (venv)(venv)bash-3.2$ pip install requests Downloading/unpacking requests Downloading requests-2.4.1-py2.py3-none-any.whl (458kB): 458kB downloaded Installing collected packages: requests Successfully installed requests Cleaning up... (venv)(venv)bash-3.2$ ./test.sh curl_tests.run_test('taxonomy/graphdb/about', {}) ... curl -X POST http://devapi.opentreeoflife.org/taxomachine/ext/taxonomy/graphdb/about -H 'content-type:application/json' -d '{}'ok curl_tests.run_test('taxonomy/graphdb/lica', {'ott_ids': [5551856, 821970, 770319]}) ... curl -X POST http://devapi.opentreeoflife.org/taxomachine/ext/taxonomy/graphdb/lica -H 'content-type:application/json' -d '{"ott_ids": [5551856, 821970, 770319]}'ok curl_tests.run_test('taxonomy/graphdb/lica', {'ott_ids': [515698, 590452, 409712, 643717]}) ... curl -X POST http://devapi.opentreeoflife.org/taxomachine/ext/taxonomy/graphdb/lica -H 'content-type:application/json' -d '{"ott_ids": [515698, 590452, 409712, 643717]}'ok curl_tests.run_test('taxonomy/graphdb/subtree', {'ott_id': 515698}) ... curl -X POST http://devapi.opentreeoflife.org/taxomachine/ext/taxonomy/graphdb/subtree -H 'content-type:application/json' -d '{"ott_id": 515698}'ok curl_tests.run_test('taxonomy/graphdb/subtree', {'ott_id': 372706}) ... curl -X POST http://devapi.opentreeoflife.org/taxomachine/ext/taxonomy/graphdb/subtree -H 'content-type:application/json' -d '{"ott_id": 372706}'ok curl_tests.run_test('taxonomy/graphdb/taxon', {'include_lineage': True, 'ott_id': 515698}) ... curl -X POST http://devapi.opentreeoflife.org/taxomachine/ext/taxonomy/graphdb/taxon -H 'content-type:application/json' -d '{"include_lineage": true, "ott_id": 515698}'ok curl_tests.run_test('taxonomy/graphdb/taxon', {'ott_id': 766177}) ... curl -X POST http://devapi.opentreeoflife.org/taxomachine/ext/taxonomy/graphdb/taxon -H 'content-type:application/json' -d '{"ott_id": 766177}'ok curl_tests.run_test('taxonomy/graphdb/flags', {}) ... curl -X POST http://devapi.opentreeoflife.org/taxomachine/ext/taxonomy/graphdb/flags -H 'content-type:application/json' -d '{}'ok curl_tests.run_test('taxonomy/graphdb/deprecated_taxa', {}) ... curl -X POST http://devapi.opentreeoflife.org/taxomachine/ext/taxonomy/graphdb/deprecated_taxa -H 'content-type:application/json' -d '{}'ok curl_tests.run_test('tnrs_v2/graphdb/match_names', {'names': ['Aster', 'Symphyotrichum', 'Erigeron', 'Barnadesia']}) ... curl -X POST http://devapi.opentreeoflife.org/taxomachine/ext/tnrs_v2/graphdb/match_names -H 'content-type:application/json' -d '{"names": ["Aster", "Symphyotrichum", "Erigeron", "Barnadesia"]}'ok curl_tests.run_test('tnrs_v2/graphdb/autocomplete_name', {'context_name': 'All life', 'name': 'Endoxyla'}) ... curl -X POST http://devapi.opentreeoflife.org/taxomachine/ext/tnrs_v2/graphdb/autocomplete_name -H 'content-type:application/json' -d '{"context_name": "All life", "name": "Endoxyla"}'ok curl_tests.run_test('tnrs_v2/graphdb/contexts', {}) ... curl -X POST http://devapi.opentreeoflife.org/taxomachine/ext/tnrs_v2/graphdb/contexts -H 'content-type:application/json' -d '{}'ok curl_tests.run_test('tnrs_v2/graphdb/infer_context', {'names': ['Pan', 'Homo', 'Mus', 'Bufo', 'Drosophila']}) ... curl -X POST http://devapi.opentreeoflife.org/taxomachine/ext/tnrs_v2/graphdb/infer_context -H 'content-type:application/json' -d '{"names": ["Pan", "Homo", "Mus", "Bufo", "Drosophila"]}'ok
Ran 13 tests in 2.113s
OK (venv)(venv)bash-3.2$
mtholder
chinchliff
pmidford
On taxomachine master branch, up to date: (venv)bash-3.2$ cd taxomachine (venv)bash-3.2$ export TAXOMACHINE_SERVER=devapi.opentreeoflife.org/taxomachine (venv)bash-3.2$ ./test.sh ./test.sh:8: nosetests: command not found (venv)bash-3.2$