search

Oshlack / Clinker

Gene Fusion Visualiser
MIT License
51 stars 12 forks source link

Disable red lines in pdf plots #10

Open messersc opened 6 years ago

messersc commented 6 years ago

Hi,

I got some plots from fusions we believe to be real. Very nice.

However, with the red vertical lines, the plots can look quite busy sometimes. Is there a way to disable these?

Thanks! Clemens

breons commented 6 years ago

Hi Clemens,

That's great to hear! I do hope you get some utility out of the visualisations.

Not through a parameter currently, I will include this feature in the next release.

If you would like a manual solution, you can make this change to plotit/fst_plot.r

change line 623 tracks <- list(orig_coords_track, axis, highlights, sashimi_plot) to tracks <- list(orig_coords_track, axis, coverage, gene_track, domain_track, transcript_track, sashimi_plot)

Let me know if you run into any issues :).

messersc commented 6 years ago

Thanks, it just occured to me that I should also increase the read support parameter so that I only get well supported junctions, which makes the plot much easier on the eyes.

But I will also try your suggestion! Clemens