search

Oshlack / Clinker

Gene Fusion Visualiser
MIT License
51 stars 12 forks source link

Clinker 1.31 not showing transcript ID's #13

Closed yunkaig closed 5 years ago

yunkaig commented 5 years ago

Hi Breon, It's me ...well, again. Thanks again for helping me to produce the PDF plots, data now makes much more sense with this visualisation. But I just encountered a new problem!

image

The transcript ID does not show up but only "unknown" in the transcript track. But in IGV the ID's showed up without a problem. I tried to debug the code in fst_plot.r, but unfortunately did not have a clue what was the problem. Could you help me on this when you can? Thanks heaps, Yunkai

breons commented 5 years ago

Hmmmm, ok, leave it with me.

When you run the test, do you get the names?

yunkaig commented 5 years ago
image

No not really...

breons commented 5 years ago

Sorry for the delay, it's been a bit crazy the last few days!

Clinker v1.31 certainly seems to have this issue out-of-the-box, I just downloaded and trialed it. Anyway, it has been resolved in Clinker v1.32 and in the v1.4 development branch. Is there any reason you're using v1.31 specifically?

If you need to use 1.31 for any reason, you could replace the fst_plot.r contents with the latest versions? That should resolve at least this issue.

Let me know how it goes.

yunkaig commented 5 years ago

It is now working well! Thank you!

breons commented 5 years ago

Groovy! Let me know if you encounter anything else.