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Oshlack / Clinker

Gene Fusion Visualiser
MIT License
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Supply bam or use single end reads? #24

Open liscruk opened 3 years ago

liscruk commented 3 years ago

Hello,

I am trying to run Clinker on JAFFAL output generated from Nanopore long-reads. Hence I do not want or have paired-end reads as input for STAR alignment. Is there a way of supply a bam directly or use the JAFFAL output ?

Thans

breons commented 3 years ago

Hi,

Sorry for the late reply!

Unfortunately, not as of yet. Though it is being discussed I think it would be quite a while until this feature is added and anything that I could recommend would be a bit hacky! Let me know if that is of interest.

Cheers, Breon.

haowBio commented 2 years ago

Hi,

I have the same requirement，have you solved it ?

Thanks