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Oshlack / JAFFA

JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions
https://github.com/Oshlack/JAFFA/wiki
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Support for T2T-CHM13? #96

Closed majdabdul closed 8 months ago

majdabdul commented 1 year ago

Hi,

Thanks for creating this tool! I'm using the T2T-CHM13 human genome. Is there a way I can use it with JAFFA?

Thanks again, Majd

nadiadavidson commented 8 months ago

Hi Majd,

We haven't build reference files to support T2T yet, but you could try to build your own if needed, https://github.com/Oshlack/JAFFA/wiki/FAQandTroubleshooting#how-can-i-generate-the-reference-files-for-a-non-supported-genome

Cheers, Nadia.