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Oshlack
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STRetch
Method for detecting STR expansions from short-read sequencing data
MIT License
62
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15
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coverage issues
#73
wangDanHua1
opened
8 months ago
0
Data analysis query
#72
aakritis0212
closed
1 year ago
3
Memory error
#71
ZohrehFattahi
opened
1 year ago
1
Error while installation
#70
ichauchcc
opened
2 years ago
3
Fix ci
#69
hdashnow
closed
2 years ago
0
[WIP] GitHub Actions for CI
#68
lonsbio
closed
2 years ago
1
ERROR with test run (hg19.STRdecoys.sorted.fasta.sa missing from test dataset)
#67
hchetia
closed
2 years ago
9
difference between stretch and strling?
#66
hchetia
closed
3 years ago
2
TypeError: ("<lambda>() got an unexpected keyword argument 'result_type'", 'occurred at index chr1-10000-10468')
#65
ghost
closed
3 years ago
4
Errors in running
#64
biosciences
opened
3 years ago
2
Error in running
#63
baoyl818
opened
3 years ago
2
Remove Bio.Alphabet
#62
hdashnow
closed
3 years ago
1
added cram option to exome bam pipeline
#61
bharatij
closed
4 years ago
2
exome_bam_pipeline cram support
#60
bharatij
closed
4 years ago
2
ImportError: cannot import name 'factorial' from 'scipy.misc'
#59
hdashnow
closed
5 years ago
0
Interpreting output
#58
DrMcStrange
closed
5 years ago
2
convert to zero-based coords
#57
bw2
opened
5 years ago
4
overlapping STRs
#56
hrafehi
closed
5 years ago
3
locus count step very slow
#55
hrafehi
closed
5 years ago
5
Could not read from remote repository.
#54
complexgenome
closed
5 years ago
1
stage estimate_size error with WGS BAM pipeline
#53
sngo318
closed
5 years ago
2
Adding script to reformat STRs.tsv output
#52
wdecoster
closed
5 years ago
5
Adding script to reformat STRs.tsv
#51
wdecoster
closed
5 years ago
3
Using different STR reference set
#50
nmmsv
closed
5 years ago
8
Unit testing and framework for short allele testing
#49
hdashnow
closed
5 years ago
1
handle incorrect bed input
#48
bw2
closed
5 years ago
1
Refer to mosdepth correctly like other tools
#47
hdashnow
opened
5 years ago
2
Fix path strings $STRetch reference
#46
bw2
closed
5 years ago
4
error on bam files
#45
hrafehi
closed
5 years ago
12
not parallel
#44
hrafehi
closed
5 years ago
2
[WIP] STRetch exome bam pipeline
#43
hdashnow
closed
5 years ago
2
Running with Exome Bam
#42
npatel22526
closed
5 years ago
23
Reusal of identifier leading to error
#41
wdecoster
closed
5 years ago
3
Multiple runs of STRetch
#40
nmmsv
closed
5 years ago
1
Install STRetch with bioconda
#39
wdecoster
opened
5 years ago
3
STRetch_wgs_pipeline fails at Stage estimate_size
#38
eugit
closed
6 years ago
1
[WIP] Str counts
#37
hdashnow
opened
6 years ago
0
Allow sample names containing underscores
#36
hdashnow
closed
6 years ago
0
Error in align_bwa_bam stage leads to a pipeline failure
#35
nmmsv
closed
6 years ago
12
Fix some warnings
#34
hdashnow
closed
6 years ago
0
trouble running STRetch
#33
Phillip-a-richmond
closed
6 years ago
3
Relevance of input_regions parameter for WGS and effect of number of samples
#32
npatel22526
closed
6 years ago
2
Install
#31
hdashnow
closed
6 years ago
0
Using Bazam to extract reads
#30
hdashnow
closed
6 years ago
0
covmed renamed to covstats in goleft
#29
martiliasf
opened
6 years ago
1
Feat faster bam pipeline
#28
hdashnow
closed
6 years ago
0
Check $EXOME_TARGET is set in exome pipeline, more informative error message
#27
hdashnow
opened
6 years ago
0
STRetch_wgs_bam_pipeline error
#26
DrMcStrange
closed
6 years ago
3
Error in `Stage median_cov_target`
#25
ifiddes-10x-zz
closed
6 years ago
19
more informative error messages about unpaired or 0 overlapping reads…
#24
hdashnow
closed
6 years ago
0
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