Oshlack STRetch issues - Githubissues

Oshlack / STRetch

Method for detecting STR expansions from short-read sequencing data

MIT License

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issues

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coverage issues

#73 wangDanHua1 opened 6 months ago
0
Data analysis query

#72 aakritis0212 closed 1 year ago
3
Memory error

#71 ZohrehFattahi opened 1 year ago
1
Error while installation

#70 ichauchcc opened 2 years ago
3
Fix ci

#69 hdashnow closed 2 years ago
0
[WIP] GitHub Actions for CI

#68 lonsbio closed 2 years ago
1
ERROR with test run (hg19.STRdecoys.sorted.fasta.sa missing from test dataset)

#67 hchetia closed 2 years ago
9
difference between stretch and strling?

#66 hchetia closed 2 years ago
2
TypeError: ("<lambda>() got an unexpected keyword argument 'result_type'", 'occurred at index chr1-10000-10468')

#65 ghost closed 3 years ago
4
Errors in running

#64 biosciences opened 3 years ago
2
Error in running

#63 baoyl818 opened 3 years ago
2
Remove Bio.Alphabet

#62 hdashnow closed 3 years ago
1
added cram option to exome bam pipeline

#61 bharatij closed 4 years ago
2
exome_bam_pipeline cram support

#60 bharatij closed 4 years ago
2
ImportError: cannot import name 'factorial' from 'scipy.misc'

#59 hdashnow closed 5 years ago
0
Interpreting output

#58 DrMcStrange closed 5 years ago
2
convert to zero-based coords

#57 bw2 opened 5 years ago
4
overlapping STRs

#56 hrafehi closed 5 years ago
3
locus count step very slow

#55 hrafehi closed 5 years ago
5
Could not read from remote repository.

#54 complexgenome closed 5 years ago
1
stage estimate_size error with WGS BAM pipeline

#53 sngo318 closed 5 years ago
2
Adding script to reformat STRs.tsv output

#52 wdecoster closed 5 years ago
5
Adding script to reformat STRs.tsv

#51 wdecoster closed 5 years ago
3
Using different STR reference set

#50 nmmsv closed 5 years ago
8
Unit testing and framework for short allele testing

#49 hdashnow closed 5 years ago
1
handle incorrect bed input

#48 bw2 closed 5 years ago
1
Refer to mosdepth correctly like other tools

#47 hdashnow opened 5 years ago
2
Fix path strings $STRetch reference

#46 bw2 closed 5 years ago
4
error on bam files

#45 hrafehi closed 5 years ago
12
not parallel

#44 hrafehi closed 5 years ago
2
[WIP] STRetch exome bam pipeline

#43 hdashnow closed 5 years ago
2
Running with Exome Bam

#42 npatel22526 closed 5 years ago
23
Reusal of identifier leading to error

#41 wdecoster closed 5 years ago
3
Multiple runs of STRetch

#40 nmmsv closed 5 years ago
1
Install STRetch with bioconda

#39 wdecoster opened 5 years ago
3
STRetch_wgs_pipeline fails at Stage estimate_size

#38 eugit closed 5 years ago
1
[WIP] Str counts

#37 hdashnow opened 5 years ago
0
Allow sample names containing underscores

#36 hdashnow closed 5 years ago
0
Error in align_bwa_bam stage leads to a pipeline failure

#35 nmmsv closed 5 years ago
12
Fix some warnings

#34 hdashnow closed 5 years ago
0
trouble running STRetch

#33 Phillip-a-richmond closed 5 years ago
3
Relevance of input_regions parameter for WGS and effect of number of samples

#32 npatel22526 closed 6 years ago
2
Install

#31 hdashnow closed 6 years ago
0
Using Bazam to extract reads

#30 hdashnow closed 6 years ago
0
covmed renamed to covstats in goleft

#29 martiliasf opened 6 years ago
1
Feat faster bam pipeline

#28 hdashnow closed 6 years ago
0
Check $EXOME_TARGET is set in exome pipeline, more informative error message

#27 hdashnow opened 6 years ago
0
STRetch_wgs_bam_pipeline error

#26 DrMcStrange closed 6 years ago
3
Error in `Stage median_cov_target`

#25 ifiddes-10x-zz closed 6 years ago
19
more informative error messages about unpaired or 0 overlapping reads…

#24 hdashnow closed 6 years ago
0