Open ChiaraF32 opened 2 years ago
Hi! Thanks so much for making Slinker, it is a great tool.
I have got the pipeline running to completion, however none of my outputs have anything in the "block" track and I am not sure why.
I have attached the pipeline log file as well as the output. This was the run script that I executed:
case=/data/preprocessed/rnaseq/muscle/TAM-M6932.markdup.sorted.bam gene=TRDN genome=38 results=/data/Slinker/results/ threads=6 samples=/data/preprocessed/rnaseq/muscle/IVCT-43Y-M.markdup.sorted.bam [1659.bpipe.log](https://github.com/Oshlack/Slinker/files/9186825/1659.bpipe.log) export SLINKERDIR=/data/Slinker bpipe -p case_sample=$case -p gene=$gene -p genome=$genome -p a_mem=20000000000 -p g_mem=20000000000 -p results=$results -p threads=$threads $SLINKERDIR/workflows/slinker.groovy $samples $case
Can you help troubleshoot what might be going wrong? Cheers!
Chiara 1659.bpipe.log
Hi! Thanks so much for making Slinker, it is a great tool.
I have got the pipeline running to completion, however none of my outputs have anything in the "block" track and I am not sure why.
I have attached the pipeline log file as well as the output. This was the run script that I executed:
Can you help troubleshoot what might be going wrong? Cheers!
Chiara 1659.bpipe.log