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Oshlack / TALLSorts

MIT License
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Input file normalization #5

Open dkapadia612 opened 8 months ago

dkapadia612 commented 8 months ago

Hello! I have a follow-up query on the normalization question posed by @anncsun. Is converting data to logCPM, normalizing to TMM, and then standardizing required before running TALLSorts, or are these steps performed by the TALLSorts -s sample.csv function? Thank you!

AllenZPGu commented 8 months ago

Hey there, thanks for the question. Your sample.csv file should be a file of raw counts, and TALLSorts will do the normalisation/standardisation for you.