Oshlack / Toblerone

MIT License
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create_bedfiles ignores gene strand for deletion naming #4

Open guillaumecharbonnier opened 2 months ago

guillaumecharbonnier commented 2 months ago

For genes on reverse strand, the exons are still numerotated in the forward strand order:

Screenshot from 2024-07-09 18-04-40

guillaumecharbonnier commented 2 months ago

Here I added a fix for this issue: https://github.com/guillaumecharbonnier/mw-lib/blob/master/src/python/create_bed_of_all_exon_deletions.py

lonsbio commented 2 months ago

Thank you for raising this issue. That solution looks good. I am scheduled to do an update to Toblerone soon and will revisit then