Oshlack / necklace

Combine reference and assembled transcriptomes for RNA-Seq analysis
https://github.com/Oshlack/necklace/wiki
GNU General Public License v3.0
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updating the beads in Necklace #19

Open MDSharma opened 7 months ago

MDSharma commented 7 months ago

Hi @nadiadavidson and @ssadedin,

Wondering if you have any thoughts / do-and-don'ts if I wanted to try and update some of the Necklace components to the latest stable versions. For example, bringing Trinity to a more recent version or Lace etc. I also remember that a while ago, there was a bug that was fixed in bpipe (related to an earlier issue).

Cheers, MD