Closed Finesim97 closed 5 years ago
R function: Input: csv file with the sequences:
"comment","sequence","realmiRNA" "mmu-mir-380 MI0000797 Mus musculus miR-380 stem-loop","AAGAUG",1 "mmu-mir-381 MI0000798 Mus musculus miR-381 stem-loop","AAUUC",1
Output: csv file with the sequence identifier and the GC content
"comment","gccont" "mmu-mir-380 MI0000797 Mus musculus miR-380 stem-loop",0.3333 "mmu-mir-381 MI0000798 Mus musculus miR-381 stem-loop",0,2
This function already does part of the work, only seqinr needs to be installed.
Result can be found in dc7c485.
R function: Input: csv file with the sequences:
Output: csv file with the sequence identifier and the GC content
This function already does part of the work, only seqinr needs to be installed.