Source paper:
Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine
See figure 1 and 2.
The best features seem to be the A(((, U(((, G((( and C((( triplets, but the calculation of all 32 variants would be nice.
R/Python function: Input: csv file with the sequences and the secondary structure:
Source paper: Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine See figure 1 and 2.
The best features seem to be the A(((, U(((, G((( and C((( triplets, but the calculation of all 32 variants would be nice.