OstfriesenBI / PredmiRNA

A set of scripts and tools to train a classifier for pre-miRNA Recognition
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Feature calculation: MFEI2 #20

Closed Finesim97 closed 5 years ago

Finesim97 commented 5 years ago

R/Python Script Input: csv file with the secondarystructure and the normalizedmfe.

"comment","secondarystructure","normalizedmfe"
"Test123 457Test healp","......((((((..))))))....",-29.90
"fefefe wefwe ffff",......((((((..))))))....,-6.90

The normalized mfe has to be divided by the number of stems with more than three base pairs to calculate MFEI1. It is unclear to me what exactly stem means in this context. Output csv file with the comment and the MFEI2.

"comment","mfei2"