Feature calculation: MFEI4 - Githubissues

OstfriesenBI / PredmiRNA

A set of scripts and tools to train a classifier for pre-miRNA Recognition

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Feature calculation: MFEI4 #24

Closed mariusrueve closed 5 years ago

mariusrueve commented 5 years ago

MFE Index 4 (MFEI4)

MFEI4 = MFE/tot_bases

MFE: minimum free energy
tot_base: total numbers of base pairs in the secondary structure

Input: csv file with MFE and tot_base

"comment","mfe","tot_base"
"test","-29.90","12"

Output: csv file with comment & mfei4

"comment","mfei4"
"test","xxx"

Finesim97 commented 5 years ago

When i read it correctly , you have to just count the number paired bases in the secondary structure: The ( or the ): ....((((((..(((((..((((((..(((.((.....)).))))))))))))))....))))))............((((((......)))))).