Feature calculation: Frequency of the MFE structure (Freq) - Githubissues

OstfriesenBI / PredmiRNA

A set of scripts and tools to train a classifier for pre-miRNA Recognition

1 stars 0 forks source link

Feature calculation: Frequency of the MFE structure (Freq) #27

Closed mariusrueve closed 5 years ago

mariusrueve commented 5 years ago

Frequency of the MFE structure (Freq)

Freq = e^((EFE - MFE)/RT

EFE: Ensemble free energy
MFE: Minimum free energy

Input: csv file with EFE, MFE

"comment","EFE","MFE"
"test","-22.30","-20.40"

Output: csv file with Freq

"comment","Freq"
"test","xxx"

Finesim97 commented 5 years ago

The frequency of the of secondary structure is also produced by RNAfold or an adjacent tool.