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Oufattole / meds-torch

MIT License
11 stars 1 forks source link

Dev #34

Closed Oufattole closed 2 weeks ago

Oufattole commented 2 weeks ago

Summary by CodeRabbit

coderabbitai[bot] commented 2 weeks ago

Walkthrough

The changes involve updates to various configuration and documentation files, including the exclusion of specific markdown files from formatting checks, modifications to installation instructions, enhancements to documentation generation scripts, and the introduction of a new README file for input encoders. Additionally, there are adjustments to the navigation structure in documentation files and imports in test files to improve clarity and organization.

Changes

Files Change Summary
.pre-commit-config.yaml Added exclude directive for mdformat to skip docs/index.md and docs/tutorial.md.
MIMICIV_TUTORIAL/README.MD, README.md Updated installation instructions and added a documentation badge.
docs/gen_ref_pages.py Enhanced functionality to process YAML files and improved navigation structure for generated docs.
mkdocs.yml Renamed "API" to "API Reference" and added "Config Reference" entry.
pyproject.toml Added new docs section with dependencies for documentation generation.
src/meds_torch/input_encoder/README.md Introduced README for input encoders detailing their purpose and functionality.
tests/test_eval.py, tests/test_transfer_learning.py Updated import statements to include kwargs with comments for clarity.

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant PreCommit
    participant GenRefPages
    participant MkDocs
    participant PyProject

    User->>PreCommit: Commit changes
    PreCommit->>User: Run formatting checks
    User->>GenRefPages: Generate documentation
    GenRefPages->>MkDocs: Update navigation structure
    MkDocs->>User: Serve documentation
    User->>PyProject: Install dependencies
    PyProject->>User: Setup documentation tools

🐇
In the meadow, I hop with glee,
Changes made, oh so sprightly!
Docs are clear, paths defined,
New encoders, all aligned!
With every tweak, we leap and bound,
In our code, joy is found! 🌼✨

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codecov-commenter commented 2 weeks ago

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Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 75.49%. Comparing base (3bcfe27) to head (a782e8b).

:exclamation: Your organization needs to install the Codecov GitHub app to enable full functionality.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #34 +/- ## ======================================= Coverage 75.49% 75.49% ======================================= Files 43 43 Lines 2346 2346 ======================================= Hits 1771 1771 Misses 575 575 ```

:umbrella: View full report in Codecov by Sentry.
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