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Oufattole / meds-torch

MIT License
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Dev #4

Closed Oufattole closed 2 months ago

Oufattole commented 2 months ago

Added functionality for pulling the spans of data for a pre-defined task. Tests for these functions are included as well. This addresses issue #2.

Summary by CodeRabbit

coderabbitai[bot] commented 2 months ago

Walkthrough

The update introduces new functionality and improves existing logic in the pytorch_dataset.py by adding global variables, new functions for dataset merging and index calculation, and refining the dataset initialization and batch collation processes. The test file test_dataloader.py sees expanded imports and more detailed assertions, enhancing test coverage and reliability.

Changes

File Change Summary
.../pytorch_dataset.py Added IDX_COL variable, functions (merge_task_with_static, get_task_indexes), refactored dataset initialization, and revised collate_triplet method.
.../test_dataloader.py Added imports for datetime and polars, enhanced assertions in test_triplet, and expanded test_task with task dataframe setup and assertions.

Sequence Diagram(s)

sequenceDiagram
    participant DatasetLoader
    participant DataFrame
    participant TaskDataFrame

    DatasetLoader->>+DataFrame: Load static data
    DatasetLoader->>+TaskDataFrame: Load task data
    DatasetLoader->>DataFrame: merge_task_with_static(TaskDataFrame)
    DatasetLoader->>DatasetLoader: Initialize dataset with merged data

    loop On Batch Creation
        DatasetLoader->>DatasetLoader: get_task_indexes()
        DatasetLoader->>DatasetLoader: collate_triplet()
        DatasetLoader->>DatasetLoader: Include 'label' tensor in batch
    end

Poem

In the world of code so bright, New functions come to light, Tasks merge with grace, Collate with a label’s embrace, Tests stand tall, their might. 🚀🐇

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