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PATRIC3 / patric3_website

Legacy PATRIC Website (JBoss Portal Version)
MIT License
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Workshop participant requests ability to analyze reads that did not map for assembly #1792

Open ARWattam opened 7 years ago

ARWattam commented 7 years ago

for plasmids as well as for phages

mshukla1 commented 6 years ago

It would be good if we dump all unassembled reads into a separate file, so that user can take it and analyze it elsewhere.

-Maulik

rkenyon commented 6 years ago

Assign to Allan?

ARWattam commented 6 years ago

I think he is the only choice at this point.

On Thu, Aug 16, 2018 at 12:28 PM, rkenyon notifications@github.com wrote:

Assign to Allan?

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olsonanl commented 6 years ago

I've been thinking about this a bit. This is related to remapping the reads to the assembled contigs, which will also give us coverage data. The generated alignment (bamfile) can also be a data product from the assembly service.

AllanDickerman commented 5 years ago

Will handle this in new assembler system