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PATRIC3 / patric3_website

Legacy PATRIC Website (JBoss Portal Version)
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Data: missing AA sequences #1918

Closed mshukla1 closed 5 years ago

mshukla1 commented 6 years ago

Looks like we have several CDSs without AA sequences in the database. Many of them match to labeled pseudogenes in RefSeq annotations. Not sure why they were called in the first place.

ACTION: Remove these genes, or change feature type to pseudogenes, or add a "partial" flag

mshukla1 commented 6 years ago

https://www.patricbrc.org/view/FeatureList/?or(keyword(%22fig%7C1529069.3.peg.2438%22),keyword(%22fig%7C1529069.3.peg.2798%22),keyword(%22fig%7C2058137.3.peg.118%22),keyword(%22fig%7C2058137.3.peg.924%22),keyword(%22fig%7C2058137.3.peg.958%22),keyword(%22fig%7C2058137.3.peg.976%22),keyword(%22fig%7C2058137.3.peg.982%22),keyword(%22fig%7C2058137.3.peg.1141%22),keyword(%22fig%7C2058137.3.peg.1217%22),keyword(%22fig%7C2058137.3.peg.1625%22),keyword(%22fig%7C2058137.3.peg.2306%22),keyword(%22fig%7C2058137.3.peg.2450%22),keyword(%22fig%7C985043.7.peg.16%22),keyword(%22fig%7C985043.7.peg.181%22),keyword(%22fig%7C985043.7.peg.184%22),keyword(%22fig%7C985043.7.peg.459%22),keyword(%22fig%7C985043.7.peg.642%22),keyword(%22fig%7C985043.7.peg.732%22),keyword(%22fig%7C985043.7.peg.924%22),keyword(%22fig%7C985043.7.peg.1369%22),keyword(%22fig%7C985043.7.peg.1455%22),keyword(%22fig%7C985043.7.peg.2658%22),keyword(%22fig%7C985043.7.peg.3220%22),keyword(%22fig%7C985043.7.peg.3230%22),keyword(%22fig%7C985043.7.peg.3277%22),keyword(%22fig%7C985043.7.peg.3402%22),keyword(%22fig%7C985043.7.peg.3755%22),keyword(%22fig%7C996801.5.peg.6%22),keyword(%22fig%7C996801.5.peg.741%22),keyword(%22fig%7C996801.5.peg.1172%22),keyword(%22fig%7C996801.5.peg.1173%22),keyword(%22fig%7C996801.5.peg.1716%22),keyword(%22fig%7C996801.5.peg.1898%22),keyword(%22fig%7C996801.5.peg.2184%22),keyword(%22fig%7C996801.5.peg.2272%22),keyword(%22fig%7C996801.5.peg.3037%22),keyword(%22fig%7C996801.6.peg.265%22),keyword(%22fig%7C996801.6.peg.353%22),keyword(%22fig%7C996801.6.peg.472%22),keyword(%22fig%7C996801.6.peg.671%22),keyword(%22fig%7C996801.6.peg.757%22),keyword(%22fig%7C996801.6.peg.1122%22),keyword(%22fig%7C996801.6.peg.1644%22),keyword(%22fig%7C996801.6.peg.2382%22),keyword(%22fig%7C996801.6.peg.2816%22),keyword(%22fig%7C996801.6.peg.2817%22),keyword(%22fig%7C996801.6.peg.3364%22),keyword(%22fig%7C996801.6.peg.3547%22))#view_tab=features&defaultSort=-score

mshukla1 commented 5 years ago

376 duplicate