search

PATRIC3 / patric3_website

Legacy PATRIC Website (JBoss Portal Version)
MIT License
5 stars 2 forks source link

genomes_quality_details_txt from genome annotation missing column heads #2154

Open ARWattam opened 5 years ago

ARWattam commented 5 years ago

Clicking on this link shows a long list of presumably gene names followed by some columns, and some of these columns have the number 1 in them. There are not column heads describing what these mean.

screen shot 2018-11-19 at 3 42 20 pm
olsonanl commented 5 years ago

This is an internal data file in a format that the RASTtk / quality analysis code expects to be there. It's not clear how adding headers will help. It's content is encoded in the quality data in the genome report HTML file.

ARWattam commented 5 years ago

If it is an internal data file, then I wonder how it helps the end user at all? If it does not provide them with useful information, we should remove it from the download files that we present to them.

olsonanl commented 5 years ago

If it makes sense we could adopt a standard among all the applications to write potentially useful output into a subfolder (as Allan is doing for the codon trees).

From: ARWattam notifications@github.com Sent: Sunday, April 14, 2019 10:44 AM To: PATRIC3/patric3_website Cc: Olson, Robert D.; Assign Subject: Re: [PATRIC3/patric3_website] genomes_quality_details_txt from genome annotation missing column heads (#2154)

If it is an internal data file, then I wonder how it helps the end user at all? If it does not provide them with useful information, we should remove it from the download files that we present to them.

— You are receiving this because you were assigned. Reply to this email directly, view it on GitHubhttps://github.com/PATRIC3/patric3_website/issues/2154#issuecomment-483002499, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ACDXIoLHnFD1iusl01tGcqBF8PMsC6fBks5vg0z0gaJpZM4Yp3HI.

ARWattam commented 5 years ago

If it is to the benefit of the end user, and reduces the files that are of no interest to them from the job output, I would be really happy about it.

From: olsonanl notifications@github.com Reply-To: PATRIC3/patric3_website reply@reply.github.com Date: Sunday, April 14, 2019 at 5:22 PM To: PATRIC3/patric3_website patric3_website@noreply.github.com Cc: "Wattam, Rebecca (arw3s)" wattam@virginia.edu, Author author@noreply.github.com Subject: Re: [PATRIC3/patric3_website] genomes_quality_details_txt from genome annotation missing column heads (#2154)

If it makes sense we could adopt a standard among all the applications to write potentially useful output into a subfolder (as Allan is doing for the codon trees).

From: ARWattam notifications@github.com Sent: Sunday, April 14, 2019 10:44 AM To: PATRIC3/patric3_website Cc: Olson, Robert D.; Assign Subject: Re: [PATRIC3/patric3_website] genomes_quality_details_txt from genome annotation missing column heads (#2154)

If it is an internal data file, then I wonder how it helps the end user at all? If it does not provide them with useful information, we should remove it from the download files that we present to them.

— You are receiving this because you were assigned. Reply to this email directly, view it on GitHubhttps://github.com/PATRIC3/patric3_website/issues/2154#issuecomment-483002499, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ACDXIoLHnFD1iusl01tGcqBF8PMsC6fBks5vg0z0gaJpZM4Yp3HI.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/PATRIC3/patric3_website/issues/2154#issuecomment-483059319, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AK8ZdJUsv1eSdkqw7N7f62dJts70I9w1ks5vg5wJgaJpZM4Yp3HI.