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PATRIC3 / patric3_website

Legacy PATRIC Website (JBoss Portal Version)
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Discrepancy in filtering of genome data from Genome tab-Bacteriophage #2290

Open ARWattam opened 5 years ago

ARWattam commented 5 years ago

I loaded all bacteriophage data, went to the genome tab, and then clicked on Synechococcus as host. It should have 97 total genomes at that point, but instead there are 157.

Screen Shot 2019-06-21 at 11 25 39 AM
dmachi commented 5 years ago

I think this is because while Synechococcus has 97 in the list, it is also including things like Synechoccoccus sp WH8102, Synechoccus sp WH7803, Syynchecoccus CB0101, etc because of the way the search in SOLR is working. I know we’ve seen this same thing before with Human and Human,Homo Sapien and cases like that.

On Jun 21, 2019, at 11:29 AM, ARWattam notifications@github.com wrote:

I loaded all bacteriophage data, went to the genome tab, and then clicked on Synechococcus as host. It should have 97 total genomes at that point, but instead there are 157. https://user-images.githubusercontent.com/11475316/59933626-d75f0c80-9417-11e9-8d2e-fdeca8b75ae1.png — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/PATRIC3/patric3_website/issues/2290?email_source=notifications&email_token=AABOQ3TMWTCIL6MPFSB2P7DP3TXWBA5CNFSM4H2SWKZKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4G27VGTA, or mute the thread https://github.com/notifications/unsubscribe-auth/AABOQ3SKWRC2ASRZUZS3HNLP3TXWBANCNFSM4H2SWKZA.

ARWattam commented 5 years ago

Ah. That does explain it. Thanks. I will try sorting on the host column to see it I get my 97 back.

From: Dustin Machi notifications@github.com Reply-To: PATRIC3/patric3_website reply@reply.github.com Date: Friday, June 21, 2019 at 11:59 AM To: PATRIC3/patric3_website patric3_website@noreply.github.com Cc: "Wattam, Rebecca (arw3s)" wattam@virginia.edu, Author author@noreply.github.com Subject: Re: [PATRIC3/patric3_website] Discrepancy in filtering of genome data from Genome tab-Bacteriophage (#2290)

I think this is because while Synechococcus has 97 in the list, it is also including things like Synechoccoccus sp WH8102, Synechoccus sp WH7803, Syynchecoccus CB0101, etc because of the way the search in SOLR is working. I know we’ve seen this same thing before with Human and Human,Homo Sapien and cases like that.

On Jun 21, 2019, at 11:29 AM, ARWattam notifications@github.com wrote:

I loaded all bacteriophage data, went to the genome tab, and then clicked on Synechococcus as host. It should have 97 total genomes at that point, but instead there are 157. https://user-images.githubusercontent.com/11475316/59933626-d75f0c80-9417-11e9-8d2e-fdeca8b75ae1.png — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/PATRIC3/patric3_website/issues/2290?email_source=notifications&email_token=AABOQ3TMWTCIL6MPFSB2P7DP3TXWBA5CNFSM4H2SWKZKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4G27VGTA, or mute the thread https://github.com/notifications/unsubscribe-auth/AABOQ3SKWRC2ASRZUZS3HNLP3TXWBANCNFSM4H2SWKZA.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/PATRIC3/patric3_website/issues/2290?email_source=notifications&email_token=ACXRS5BPDGZAMQORO5I7ZF3P3T3HXA5CNFSM4H2SWKZKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODYI3XRI#issuecomment-504478661, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ACXRS5GRMPUHHMRPPJXHXULP3T3HXANCNFSM4H2SWKZA.

ARWattam commented 5 years ago

Still, I have been thinking about it, and I clicked on the one host that had 97 genomes. It would be different if I did the keyword search at the top. I still think that if I have that particular selection, it should give me that particular result.