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PATRIC3 / patric3_website

Legacy PATRIC Website (JBoss Portal Version)
MIT License
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figfam id does not match to production description #428

Closed hyoo closed 9 years ago

hyoo commented 9 years ago

for example, http://harad.vbi.vt.edu:8983/solr/genome_feature/select?q=patric_id:fig|445986.17.peg.17&wt=json&indent=true

this feature says figfam_id is FIG00434305, but in product, FIG00434306: hypothetical protein

olsonanl commented 9 years ago

Yup, that happens. Not a bug. The annotations (esp of hypotheticals) and figfam ids of the proteins drifted.

—bob

On Sep 3, 2015, at 11:01 AM, Harry Yoo notifications@github.com<mailto:notifications@github.com> wrote:

for example, http://harad.vbi.vt.edu:8983/solr/genome_feature/select?q=patric_id:fig|445986.17.peg.17&wt=json&indent=truehttp://harad.vbi.vt.edu:8983/solr/genome_feature/select?q=patric_id:fig%7C445986.17.peg.17&wt=json&indent=true

this feature says figfam_id is FIG00434305, but in product, FIG00434306: hypothetical protein

— Reply to this email directly or view it on GitHubhttps://github.com/PATRIC3/patric3_website/issues/428.

mshukla1 commented 9 years ago

I believe, many of the hypothetical product names are stripped off of the FIGXXXXX in the new recall. That, plus the fact that now we have alternate protein families, hopefully, will reduce the confusion going forward.

However, there may still be some with FIGXXXXX in the product names. It is part of manual curation in CoreSEED. We will not be addressing this issue.