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PATRIC3 / patric3_website

Legacy PATRIC Website (JBoss Portal Version)
MIT License
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Perfect families in Protein Family Sorter not working #563

Closed ARWattam closed 8 years ago

ARWattam commented 8 years ago

Perfect families do not seem to be meeting the criterion presented on the PFS. See screenshot below: screen shot 2015-12-08 at 11 58 12 am

mshukla1 commented 8 years ago

The perfect protein families here means protein families that contain at the most one protein per genome, or that a family does not have more than one proteins per genome (paralogs or multiple gene fragments).

However, it does not mean all the genomes selected are present in that protein family (i.e. core genome), hence you see singletons and doubletons as well.

This this not a bug or something new, this is the same definition we have used since we launched PFS first time in PATRIC1.

-Maulik