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PEtab-dev / PEtab

PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
https://petab.readthedocs.io
MIT License
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Perelson transformation overflow issue #146

Closed fbergmann closed 4 years ago

fbergmann commented 4 years ago

i've encountered an issue with transforming the measurement data of Perelson_Science1996. There in the measurement file measurementData_Perelson_Science1996.tsv The data is indicated as being log10 transformed, however, there is a math range issue with pow(10, 3208000).

it would be good to check this

dweindl commented 4 years ago

observableTransformation=log10 is meant to indicate that we will take log10 of model and data in the objective function. We will try to clarify that in the documentation.

dweindl commented 4 years ago

When #154 is resolved, we need to re-check all models.

dweindl commented 4 years ago

Measurement file should be fine. See comment above. Now more clearly formulated in the PEtab documentation. Closing.